J4_4V54_009

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V54|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V54_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1744

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V54|1|BB|U|1313
4V54|1|BB|C|1314
*
4V54|1|BB|G|1338
4V54|1|BB|G|1339
4V54|1|BB|U|1340
4V54|1|BB|G|1341
4V54|1|BB|A|1342
4V54|1|BB|G|1343
*
4V54|1|BB|C|1404
4V54|1|BB|U|1405
*
4V54|1|BB|A|1597
4V54|1|BB|A|1598
4V54|1|BB|U|1599
4V54|1|BB|C|1600
4V54|1|BB|G|1601
4V54|1|BB|U|1602
4V54|1|BB|A|1603

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L23