J4_4V55_004

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V55|1|BB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V55_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1799

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V55|1|BB|C|268
4V55|1|BB|C|269
*
4V55|1|BB|G|370
4V55|1|BB|A|371
4V55|1|BB|G|372
4V55|1|BB|U|373
4V55|1|BB|A|374
4V55|1|BB|G|375
*
4V55|1|BB|U|399
4V55|1|BB|G|400
4V55|1|BB|A|401
4V55|1|BB|A|402
4V55|1|BB|U|403
4V55|1|BB|A|404
4V55|1|BB|U|405
4V55|1|BB|G|406
*
4V55|1|BB|C|421
4V55|1|BB|A|422
4V55|1|BB|A|423
4V55|1|BB|G|424

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28