J4_4V56_002

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V56|1|AA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V56_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1825

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V56|1|AA|G|142
4V56|1|AA|A|143
4V56|1|AA|G|144
*
4V56|1|AA|C|178
4V56|1|AA|A|179
4V56|1|AA|U|180
4V56|1|AA|A|181
4V56|1|AA|A|182
4V56|1|AA|C|183
4V56|1|AA|G|184
*
4V56|1|AA|C|193
4V56|1|AA|C|194
4V56|1|AA|A|195
4V56|1|AA|A|196
4V56|1|AA|A|197
4V56|1|AA|G|198
*
4V56|1|AA|U|219
4V56|1|AA|G|220
4V56|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20