J4_4V56_014

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V56|1|CA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V56_014 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.1888

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V56|1|CA|G|115
4V56|1|CA|A|116
4V56|1|CA|G|117
4V56|1|CA|U|118
4V56|1|CA|A|119
4V56|1|CA|A|120
4V56|1|CA|U|121
4V56|1|CA|G|122
*
4V56|1|CA|U|239
4V56|1|CA|G|240
*
4V56|1|CA|C|286
4V56|1|CA|U|287
4V56|1|CA|A|288
4V56|1|CA|G|289
*
4V56|1|CA|C|311
4V56|1|CA|C|312

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17