J4_4V56_017

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V56|1|DB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V56_017 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1165

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V56|1|DB|C|268
4V56|1|DB|C|269
*
4V56|1|DB|G|370
4V56|1|DB|A|371
4V56|1|DB|G|372
4V56|1|DB|U|373
4V56|1|DB|A|374
4V56|1|DB|G|375
*
4V56|1|DB|U|399
4V56|1|DB|G|400
4V56|1|DB|A|401
4V56|1|DB|A|402
4V56|1|DB|U|403
4V56|1|DB|A|404
4V56|1|DB|U|405
4V56|1|DB|G|406
*
4V56|1|DB|C|421
4V56|1|DB|A|422
4V56|1|DB|A|423
4V56|1|DB|G|424

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28