3D structure

PDB id
4V57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4V57|1|BB|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V57_004 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1177
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V57|1|BB|C|268
4V57|1|BB|C|269
*
4V57|1|BB|G|370
4V57|1|BB|A|371
4V57|1|BB|G|372
4V57|1|BB|U|373
4V57|1|BB|A|374
4V57|1|BB|G|375
*
4V57|1|BB|U|399
4V57|1|BB|G|400
4V57|1|BB|A|401
4V57|1|BB|A|402
4V57|1|BB|U|403
4V57|1|BB|A|404
4V57|1|BB|U|405
4V57|1|BB|G|406
*
4V57|1|BB|C|421
4V57|1|BB|A|422
4V57|1|BB|A|423
4V57|1|BB|G|424

Current chains

Chain BB
23S rRNA

Nearby chains

Chain BH
50S ribosomal protein L9
Chain BZ
50S ribosomal protein L28

Coloring options:


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