J4_4V57_004

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V57|1|BB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V57_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1177

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V57|1|BB|C|268
4V57|1|BB|C|269
*
4V57|1|BB|G|370
4V57|1|BB|A|371
4V57|1|BB|G|372
4V57|1|BB|U|373
4V57|1|BB|A|374
4V57|1|BB|G|375
*
4V57|1|BB|U|399
4V57|1|BB|G|400
4V57|1|BB|A|401
4V57|1|BB|A|402
4V57|1|BB|U|403
4V57|1|BB|A|404
4V57|1|BB|U|405
4V57|1|BB|G|406
*
4V57|1|BB|C|421
4V57|1|BB|A|422
4V57|1|BB|A|423
4V57|1|BB|G|424

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28