J4_4V5A_005

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5A_005 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1106

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4V5A|1|BA|C|297
4V5A|1|BA|G|298
4V5A|1|BA|A|299
4V5A|1|BA|A|300
4V5A|1|BA|G|301
*
4V5A|1|BA|C|316
4V5A|1|BA|G|317
4V5A|1|BA|C|318
4V5A|1|BA|C|319
*
4V5A|1|BA|G|323
4V5A|1|BA|A|324
4V5A|1|BA|G|325
*
4V5A|1|BA|C|337
4V5A|1|BA|G|338
4V5A|1|BA|U|339
4V5A|1|BA|A|340
4V5A|1|BA|G|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24