J4_4V5A_015

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAGGG*CCCGC

Length

21 nucleotides

Bulged bases

4V5A|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|CA|G|142
4V5A|1|CA|A|143
4V5A|1|CA|G|144
*
4V5A|1|CA|C|178
4V5A|1|CA|A|179
4V5A|1|CA|U|180
4V5A|1|CA|G|181
4V5A|1|CA|U|182
4V5A|1|CA|G|183
*
4V5A|1|CA|C|194
4V5A|1|CA|A|195
4V5A|1|CA|A|196
4V5A|1|CA|A|197
4V5A|1|CA|G|198
4V5A|1|CA|G|199
4V5A|1|CA|G|200
*
4V5A|1|CA|C|217
4V5A|1|CA|C|218
4V5A|1|CA|C|219
4V5A|1|CA|G|220
4V5A|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20