J4_4V5A_024

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAGUUGG*UG*CCGCAGUGAACAGG*CGC

Length

28 nucleotides

Bulged bases

4V5A|1|DA|G|1758, 4V5A|1|DA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|DA|G|1674
4V5A|1|DA|C|1675
4V5A|1|DA|A|1676
4V5A|1|DA|A|1677
4V5A|1|DA|G|1678
4V5A|1|DA|U|1679
4V5A|1|DA|U|1680
4V5A|1|DA|G|1681
4V5A|1|DA|G|1682
*
4V5A|1|DA|U|1706
4V5A|1|DA|G|1707
*
4V5A|1|DA|C|1751
4V5A|1|DA|C|1752
4V5A|1|DA|G|1753
4V5A|1|DA|C|1754
4V5A|1|DA|A|1755
4V5A|1|DA|G|1756
4V5A|1|DA|U|1757
4V5A|1|DA|G|1758
4V5A|1|DA|A|1759
4V5A|1|DA|A|1760
4V5A|1|DA|C|1761
4V5A|1|DA|A|1762
4V5A|1|DA|G|1763
4V5A|1|DA|G|1764
*
4V5A|1|DA|C|1988
4V5A|1|DA|G|1989
4V5A|1|DA|C|1990

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DO

50S RIBOSOMAL PROTEIN L14

Chain DT

50S RIBOSOMAL PROTEIN L19