J4_4V5B_004
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GGUUCC*GGGUGAG*CUU*AAAUCGUAC
- Length
- 25 nucleotides
- Bulged bases
- 4V5B|1|AB|G|1341, 4V5B|1|AB|A|1598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|AB|G|1310
4V5B|1|AB|G|1311
4V5B|1|AB|U|1312
4V5B|1|AB|U|1313
4V5B|1|AB|C|1314
4V5B|1|AB|C|1315
*
4V5B|1|AB|G|1337
4V5B|1|AB|G|1338
4V5B|1|AB|G|1339
4V5B|1|AB|U|1340
4V5B|1|AB|G|1341
4V5B|1|AB|A|1342
4V5B|1|AB|G|1343
*
4V5B|1|AB|C|1404
4V5B|1|AB|U|1405
4V5B|1|AB|U|1406
*
4V5B|1|AB|A|1596
4V5B|1|AB|A|1597
4V5B|1|AB|A|1598
4V5B|1|AB|U|1599
4V5B|1|AB|C|1600
4V5B|1|AB|G|1601
4V5B|1|AB|U|1602
4V5B|1|AB|A|1603
4V5B|1|AB|C|1604
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain A2
- 50S RIBOSOMAL PROTEIN L34
- Chain AT
- 50S RIBOSOMAL PROTEIN L23
- Chain AX
- 50S RIBOSOMAL PROTEIN L29
Coloring options: