J4_4V5B_007
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GCAAAAUGG*CGCUG*CAGUCGAAGAUACCAGCUG*CAGGC
- Length
- 38 nucleotides
- Bulged bases
- 4V5B|1|AB|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|AB|G|1674
4V5B|1|AB|C|1675
4V5B|1|AB|A|1676
4V5B|1|AB|A|1677
4V5B|1|AB|A|1678
4V5B|1|AB|A|1679
4V5B|1|AB|U|1680
4V5B|1|AB|G|1681
4V5B|1|AB|G|1682
*
4V5B|1|AB|C|1706
4V5B|1|AB|G|1707
4V5B|1|AB|C|1708
4V5B|1|AB|U|1709
4V5B|1|AB|G|1710
*
4V5B|1|AB|C|1748
4V5B|1|AB|A|1749
4V5B|1|AB|G|1750
4V5B|1|AB|U|1751
4V5B|1|AB|C|1752
4V5B|1|AB|G|1753
4V5B|1|AB|A|1754
4V5B|1|AB|A|1755
4V5B|1|AB|G|1756
4V5B|1|AB|A|1757
4V5B|1|AB|U|1758
4V5B|1|AB|A|1759
4V5B|1|AB|C|1760
4V5B|1|AB|C|1761
4V5B|1|AB|A|1762
4V5B|1|AB|G|1763
4V5B|1|AB|C|1764
4V5B|1|AB|U|1765
4V5B|1|AB|G|1766
*
4V5B|1|AB|C|1986
4V5B|1|AB|A|1987
4V5B|1|AB|G|1988
4V5B|1|AB|G|1989
4V5B|1|AB|C|1990
Current chains
- Chain AB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain AD
- 50S RIBOSOMAL PROTEIN L3
- Chain AK
- 50S RIBOSOMAL PROTEIN L14
- Chain AP
- 50S RIBOSOMAL PROTEIN L19
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: