J4_4V5B_015

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAUAAA*UC*GCUUG*CAG

Length

17 nucleotides

Bulged bases

4V5B|1|CB|G|1271, 4V5B|1|CB|A|1272, 4V5B|1|CB|U|1273, 4V5B|1|CB|A|1274, 4V5B|1|CB|C|1646, 4V5B|1|CB|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|C|1270
4V5B|1|CB|G|1271
4V5B|1|CB|A|1272
4V5B|1|CB|U|1273
4V5B|1|CB|A|1274
4V5B|1|CB|A|1275
4V5B|1|CB|A|1276
*
4V5B|1|CB|U|1294
4V5B|1|CB|C|1295
*
4V5B|1|CB|G|1645
4V5B|1|CB|C|1646
4V5B|1|CB|U|1647
4V5B|1|CB|U|1648
4V5B|1|CB|G|1649
*
4V5B|1|CB|C|2008
4V5B|1|CB|A|2009
4V5B|1|CB|G|2010

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C0

50S RIBOSOMAL PROTEIN L32

Chain CN

50S RIBOSOMAL PROTEIN L17

Chain CS

50S RIBOSOMAL PROTEIN L22