J4_4V5B_019

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GCAAAAUGG*CGCUG*CAGUCGAAGAUACCAGCUG*CAGGC

Length

38 nucleotides

Bulged bases

4V5B|1|CB|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|1674
4V5B|1|CB|C|1675
4V5B|1|CB|A|1676
4V5B|1|CB|A|1677
4V5B|1|CB|A|1678
4V5B|1|CB|A|1679
4V5B|1|CB|U|1680
4V5B|1|CB|G|1681
4V5B|1|CB|G|1682
*
4V5B|1|CB|C|1706
4V5B|1|CB|G|1707
4V5B|1|CB|C|1708
4V5B|1|CB|U|1709
4V5B|1|CB|G|1710
*
4V5B|1|CB|C|1748
4V5B|1|CB|A|1749
4V5B|1|CB|G|1750
4V5B|1|CB|U|1751
4V5B|1|CB|C|1752
4V5B|1|CB|G|1753
4V5B|1|CB|A|1754
4V5B|1|CB|A|1755
4V5B|1|CB|G|1756
4V5B|1|CB|A|1757
4V5B|1|CB|U|1758
4V5B|1|CB|A|1759
4V5B|1|CB|C|1760
4V5B|1|CB|C|1761
4V5B|1|CB|A|1762
4V5B|1|CB|G|1763
4V5B|1|CB|C|1764
4V5B|1|CB|U|1765
4V5B|1|CB|G|1766
*
4V5B|1|CB|C|1986
4V5B|1|CB|A|1987
4V5B|1|CB|G|1988
4V5B|1|CB|G|1989
4V5B|1|CB|C|1990

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CD

50S RIBOSOMAL PROTEIN L3

Chain CK

50S RIBOSOMAL PROTEIN L14

Chain CP

50S RIBOSOMAL PROTEIN L19

Chain DA

Small subunit ribosomal RNA; SSU rRNA