J4_4V5B_021

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUG*CG*CCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAUG

Length

39 nucleotides

Bulged bases

4V5B|1|CB|A|1938, 4V5B|1|CB|U|1944, 4V5B|1|CB|U|1963, 4V5B|1|CB|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|C|1833
4V5B|1|CB|U|1834
4V5B|1|CB|G|1835
*
4V5B|1|CB|C|1905
4V5B|1|CB|G|1906
*
4V5B|1|CB|C|1924
4V5B|1|CB|C|1925
4V5B|1|CB|U|1926
4V5B|1|CB|A|1927
4V5B|1|CB|A|1928
4V5B|1|CB|G|1929
4V5B|1|CB|G|1930
4V5B|1|CB|U|1931
4V5B|1|CB|A|1932
4V5B|1|CB|G|1933
4V5B|1|CB|C|1934
4V5B|1|CB|G|1935
4V5B|1|CB|A|1936
4V5B|1|CB|A|1937
4V5B|1|CB|A|1938
4V5B|1|CB|U|1939
4V5B|1|CB|U|1940
4V5B|1|CB|C|1941
4V5B|1|CB|C|1942
4V5B|1|CB|U|1943
4V5B|1|CB|U|1944
4V5B|1|CB|G|1945
*
4V5B|1|CB|C|1961
4V5B|1|CB|C|1962
4V5B|1|CB|U|1963
4V5B|1|CB|G|1964
4V5B|1|CB|C|1965
4V5B|1|CB|A|1966
4V5B|1|CB|C|1967
4V5B|1|CB|G|1968
4V5B|1|CB|A|1969
4V5B|1|CB|A|1970
4V5B|1|CB|U|1971
4V5B|1|CB|G|1972

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CC

50S RIBOSOMAL PROTEIN L2

Chain DA

Small subunit ribosomal RNA; SSU rRNA