J4_4V5B_022

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGGGC*GAC*GGAAGAGAUAAGU*ACGAAACUUGCCC

Length

35 nucleotides

Bulged bases

4V5B|1|CB|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|CB|G|2641
4V5B|1|CB|G|2642
4V5B|1|CB|G|2643
4V5B|1|CB|G|2644
4V5B|1|CB|G|2645
4V5B|1|CB|C|2646
*
4V5B|1|CB|G|2674
4V5B|1|CB|A|2675
4V5B|1|CB|C|2676
*
4V5B|1|CB|G|2731
4V5B|1|CB|G|2732
4V5B|1|CB|A|2733
4V5B|1|CB|A|2734
4V5B|1|CB|G|2735
4V5B|1|CB|A|2736
4V5B|1|CB|G|2737
4V5B|1|CB|A|2738
4V5B|1|CB|U|2739
4V5B|1|CB|A|2740
4V5B|1|CB|A|2741
4V5B|1|CB|G|2742
4V5B|1|CB|U|2743
*
4V5B|1|CB|A|2761
4V5B|1|CB|C|2762
4V5B|1|CB|G|2763
4V5B|1|CB|A|2764
4V5B|1|CB|A|2765
4V5B|1|CB|A|2766
4V5B|1|CB|C|2767
4V5B|1|CB|U|2768
4V5B|1|CB|U|2769
4V5B|1|CB|G|2770
4V5B|1|CB|C|2771
4V5B|1|CB|C|2772
4V5B|1|CB|C|2773

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain C4

50S RIBOSOMAL PROTEIN L36

Chain CD

50S RIBOSOMAL PROTEIN L3

Chain CG

50S RIBOSOMAL PROTEIN L6

Chain CJ

50S RIBOSOMAL PROTEIN L13

Chain CK

50S RIBOSOMAL PROTEIN L14