J4_4V5B_023

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGAG*CUUGC

Length

23 nucleotides

Bulged bases

4V5B|1|DA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|142
4V5B|1|DA|A|143
4V5B|1|DA|G|144
*
4V5B|1|DA|C|178
4V5B|1|DA|A|179
4V5B|1|DA|U|180
4V5B|1|DA|A|181
4V5B|1|DA|A|182
4V5B|1|DA|C|183
4V5B|1|DA|G|184
*
4V5B|1|DA|C|193
4V5B|1|DA|C|194
4V5B|1|DA|A|195
4V5B|1|DA|A|196
4V5B|1|DA|A|197
4V5B|1|DA|G|198
4V5B|1|DA|A|199
4V5B|1|DA|G|200
*
4V5B|1|DA|C|217
4V5B|1|DA|U|218
4V5B|1|DA|U|219
4V5B|1|DA|G|220
4V5B|1|DA|C|221

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DT

30S RIBOSOMAL PROTEIN S20