J4_4V5B_025

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUGGA*UACAAUGGC*GUCGUAGUCCGGAUUG*CAUGAAGUCGGAAUC

Length

46 nucleotides

Bulged bases

4V5B|1|DA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|DA|G|941
4V5B|1|DA|G|942
4V5B|1|DA|U|943
4V5B|1|DA|G|944
4V5B|1|DA|G|945
4V5B|1|DA|A|946
*
4V5B|1|DA|U|1235
4V5B|1|DA|A|1236
4V5B|1|DA|C|1237
4V5B|1|DA|A|1238
4V5B|1|DA|A|1239
4V5B|1|DA|U|1240
4V5B|1|DA|G|1241
4V5B|1|DA|G|1242
4V5B|1|DA|C|1243
*
4V5B|1|DA|G|1294
4V5B|1|DA|U|1295
4V5B|1|DA|C|1296
4V5B|1|DA|G|1297
4V5B|1|DA|U|1298
4V5B|1|DA|A|1299
4V5B|1|DA|G|1300
4V5B|1|DA|U|1301
4V5B|1|DA|C|1302
4V5B|1|DA|C|1303
4V5B|1|DA|G|1304
4V5B|1|DA|G|1305
4V5B|1|DA|A|1306
4V5B|1|DA|U|1307
4V5B|1|DA|U|1308
4V5B|1|DA|G|1309
*
4V5B|1|DA|C|1328
4V5B|1|DA|A|1329
4V5B|1|DA|U|1330
4V5B|1|DA|G|1331
4V5B|1|DA|A|1332
4V5B|1|DA|A|1333
4V5B|1|DA|G|1334
4V5B|1|DA|U|1335
4V5B|1|DA|C|1336
4V5B|1|DA|G|1337
4V5B|1|DA|G|1338
4V5B|1|DA|A|1339
4V5B|1|DA|A|1340
4V5B|1|DA|U|1341
4V5B|1|DA|C|1342

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DG

30S RIBOSOMAL PROTEIN S7

Chain DI

30S RIBOSOMAL PROTEIN S9

Chain DM

30S RIBOSOMAL PROTEIN S13

Chain DS

30S RIBOSOMAL PROTEIN S19