J4_4V5B_026

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CCAGA*UCGAUGAGUAG*UGAAUAUG*CAAG

Length

28 nucleotides

Bulged bases

4V5B|1|AB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|C|268
4V5B|1|AB|C|269
4V5B|1|AB|A|270
4V5B|1|AB|G|271
4V5B|1|AB|A|272
*
4V5B|1|AB|U|365
4V5B|1|AB|C|366
4V5B|1|AB|G|367
4V5B|1|AB|A|368
4V5B|1|AB|U|369
4V5B|1|AB|G|370
4V5B|1|AB|A|371
4V5B|1|AB|G|372
4V5B|1|AB|U|373
4V5B|1|AB|A|374
4V5B|1|AB|G|375
*
4V5B|1|AB|U|399
4V5B|1|AB|G|400
4V5B|1|AB|A|401
4V5B|1|AB|A|402
4V5B|1|AB|U|403
4V5B|1|AB|A|404
4V5B|1|AB|U|405
4V5B|1|AB|G|406
*
4V5B|1|AB|C|421
4V5B|1|AB|A|422
4V5B|1|AB|A|423
4V5B|1|AB|G|424

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AH

50S RIBOSOMAL PROTEIN L9

Chain AZ

50S RIBOSOMAL PROTEIN L31