J4_4V5B_036
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 4V5B|1|CB|U|653, 4V5B|1|CB|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5B_036 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.3781
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V5B|1|CB|C|601
4V5B|1|CB|A|602
4V5B|1|CB|A|603
4V5B|1|CB|G|604
*
4V5B|1|CB|C|624
4V5B|1|CB|G|625
4V5B|1|CB|A|626
4V5B|1|CB|A|627
4V5B|1|CB|G|628
*
4V5B|1|CB|C|635
4V5B|1|CB|G|636
4V5B|1|CB|A|637
4V5B|1|CB|G|638
*
4V5B|1|CB|C|650
4V5B|1|CB|G|651
4V5B|1|CB|U|652
4V5B|1|CB|U|653
4V5B|1|CB|A|654
4V5B|1|CB|A|655
4V5B|1|CB|G|656
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C3
- 50S RIBOSOMAL PROTEIN L35
- Chain CE
- 50S RIBOSOMAL PROTEIN L4
- Chain CL
- 50S RIBOSOMAL PROTEIN L15
Coloring options: