J4_4V5C_006

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V5C|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5C_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1443

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5C|1|BA|C|268
4V5C|1|BA|U|269
*
4V5C|1|BA|G|370
4V5C|1|BA|A|371
4V5C|1|BA|G|372
4V5C|1|BA|U|373
4V5C|1|BA|A|374
4V5C|1|BA|C|375
*
4V5C|1|BA|G|399
4V5C|1|BA|G|400
4V5C|1|BA|A|401
4V5C|1|BA|A|402
4V5C|1|BA|U|403
4V5C|1|BA|C|404
4V5C|1|BA|U|405
4V5C|1|BA|G|406
*
4V5C|1|BA|U|421
4V5C|1|BA|A|422
4V5C|1|BA|A|423
4V5C|1|BA|G|424

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9