J4_4V5C_017

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V5C|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5C_017 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0947

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5C|1|CA|G|115
4V5C|1|CA|A|116
4V5C|1|CA|G|117
4V5C|1|CA|U|118
4V5C|1|CA|A|119
4V5C|1|CA|A|120
4V5C|1|CA|C|121
4V5C|1|CA|G|122
*
4V5C|1|CA|U|239
4V5C|1|CA|C|240
*
4V5C|1|CA|G|286
4V5C|1|CA|U|287
4V5C|1|CA|A|288
4V5C|1|CA|G|289
*
4V5C|1|CA|C|311
4V5C|1|CA|C|312

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CQ

30S RIBOSOMAL PROTEIN S17