J4_4V5D_023

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V5D|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5D_023 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1627

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5D|1|DA|C|268
4V5D|1|DA|U|269
*
4V5D|1|DA|G|370
4V5D|1|DA|A|371
4V5D|1|DA|G|372
4V5D|1|DA|U|373
4V5D|1|DA|A|374
4V5D|1|DA|C|375
*
4V5D|1|DA|G|399
4V5D|1|DA|G|400
4V5D|1|DA|A|401
4V5D|1|DA|A|402
4V5D|1|DA|U|403
4V5D|1|DA|C|404
4V5D|1|DA|U|405
4V5D|1|DA|G|406
*
4V5D|1|DA|U|421
4V5D|1|DA|A|422
4V5D|1|DA|A|423
4V5D|1|DA|G|424

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DI

50S RIBOSOMAL PROTEIN L9