J4_4V5D_033
3D structure
- PDB id
- 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*CGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5D_033 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.0933
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V5D|1|DA|G|2643
4V5D|1|DA|G|2644
4V5D|1|DA|G|2645
4V5D|1|DA|C|2646
*
4V5D|1|DA|G|2674
4V5D|1|DA|A|2675
4V5D|1|DA|C|2676
*
4V5D|1|DA|G|2731
4V5D|1|DA|G|2732
4V5D|1|DA|A|2733
4V5D|1|DA|A|2734
4V5D|1|DA|G|2735
*
4V5D|1|DA|C|2769
4V5D|1|DA|G|2770
4V5D|1|DA|C|2771
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain DE
- 50S RIBOSOMAL PROTEIN L3
- Chain DN
- 50S RIBOSOMAL PROTEIN L13
- Chain DO
- 50S RIBOSOMAL PROTEIN L14
Coloring options: