J4_4V5H_006
3D structure
- PDB id
- 4V5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5H_006 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.1426
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5H|1|BB|G|297
4V5H|1|BB|G|298
4V5H|1|BB|A|299
4V5H|1|BB|A|300
4V5H|1|BB|G|301
*
4V5H|1|BB|C|316
4V5H|1|BB|G|317
4V5H|1|BB|C|318
4V5H|1|BB|G|319
*
4V5H|1|BB|C|323
4V5H|1|BB|A|324
4V5H|1|BB|G|325
*
4V5H|1|BB|C|337
4V5H|1|BB|G|338
4V5H|1|BB|U|339
4V5H|1|BB|A|340
4V5H|1|BB|C|341
Current chains
- Chain BB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BE
- 50S RIBOSOMAL PROTEIN L4
- Chain BU
- 50S RIBOSOMAL PROTEIN L24
Coloring options: