J4_4V5H_007

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V5H|1|BB|U|653, 4V5H|1|BB|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5H_007 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5246

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5H|1|BB|C|601
4V5H|1|BB|A|602
4V5H|1|BB|A|603
4V5H|1|BB|G|604
*
4V5H|1|BB|C|624
4V5H|1|BB|G|625
4V5H|1|BB|A|626
4V5H|1|BB|A|627
4V5H|1|BB|G|628
*
4V5H|1|BB|C|635
4V5H|1|BB|G|636
4V5H|1|BB|A|637
4V5H|1|BB|G|638
*
4V5H|1|BB|C|650
4V5H|1|BB|G|651
4V5H|1|BB|U|652
4V5H|1|BB|U|653
4V5H|1|BB|A|654
4V5H|1|BB|A|655
4V5H|1|BB|G|656

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L35

Chain BE

50S RIBOSOMAL PROTEIN L4

Chain BL

50S RIBOSOMAL PROTEIN L15