J4_4V5J_017

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V5J|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5J_017 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0651

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5J|1|CA|G|115
4V5J|1|CA|A|116
4V5J|1|CA|G|117
4V5J|1|CA|U|118
4V5J|1|CA|A|119
4V5J|1|CA|A|120
4V5J|1|CA|C|121
4V5J|1|CA|G|122
*
4V5J|1|CA|U|239
4V5J|1|CA|C|240
*
4V5J|1|CA|G|286
4V5J|1|CA|U|287
4V5J|1|CA|A|288
4V5J|1|CA|G|289
*
4V5J|1|CA|C|311
4V5J|1|CA|C|312

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CQ

30S RIBOSOMAL PROTEIN S17