J4_4V5K_015

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5K_015 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0772

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V5K|1|BA|G|2643
4V5K|1|BA|G|2644
4V5K|1|BA|G|2645
4V5K|1|BA|C|2646
*
4V5K|1|BA|G|2674
4V5K|1|BA|A|2675
4V5K|1|BA|C|2676
*
4V5K|1|BA|G|2731
4V5K|1|BA|G|2732
4V5K|1|BA|A|2733
4V5K|1|BA|A|2734
4V5K|1|BA|G|2735
*
4V5K|1|BA|C|2769
4V5K|1|BA|G|2770
4V5K|1|BA|C|2771

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BO

50S RIBOSOMAL PROTEIN L14