J4_4V5K_016

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V5K|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5K_016 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0701

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V5K|1|CA|G|115
4V5K|1|CA|A|116
4V5K|1|CA|G|117
4V5K|1|CA|U|118
4V5K|1|CA|A|119
4V5K|1|CA|A|120
4V5K|1|CA|C|121
4V5K|1|CA|G|122
*
4V5K|1|CA|U|239
4V5K|1|CA|C|240
*
4V5K|1|CA|G|286
4V5K|1|CA|U|287
4V5K|1|CA|A|288
4V5K|1|CA|G|289
*
4V5K|1|CA|C|311
4V5K|1|CA|C|312

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CQ

30S RIBOSOMAL PROTEIN S17