J4_4V5L_006
3D structure
- PDB id
- 4V5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(4SU)AG*CAC*GGU(7MG)UUG*CC
- Length
- 16 nucleotides
- Bulged bases
- 4V5L|1|AY|4SU|8, 4V5L|1|AY|U|47, 4V5L|1|AY|U|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V5L_006 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.3244
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V5L|1|AY|G|7
4V5L|1|AY|4SU|8
4V5L|1|AY|A|9
4V5L|1|AY|G|10
*
4V5L|1|AY|C|25
4V5L|1|AY|A|26
4V5L|1|AY|C|27
*
4V5L|1|AY|G|43
4V5L|1|AY|G|44
4V5L|1|AY|U|45
4V5L|1|AY|7MG|46
4V5L|1|AY|U|47
4V5L|1|AY|U|48
4V5L|1|AY|G|49
*
4V5L|1|AY|C|65
4V5L|1|AY|C|66
Current chains
- Chain AY
- A-SITE TRNA G24A TRP-TRNA TRP
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S RIBOSOMAL PROTEIN S12
- Chain AZ
- ELONGATION FACTOR TU
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: