J4_5WT1_002

3D structure

PDB id

5WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pyrococcus abyssi methyltransferase PaTrm5a bound by SAH and cognate tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUAG*CAC*GGUGUCG*CC

Length

16 nucleotides

Bulged bases

5WT1|1|C|U|8, 5WT1|1|C|U|47, 5WT1|1|C|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_22413.3

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5WT1|1|C|G|7
5WT1|1|C|U|8
5WT1|1|C|A|9
5WT1|1|C|G|10
*
5WT1|1|C|C|25
5WT1|1|C|A|26
5WT1|1|C|C|27
*
5WT1|1|C|G|43
5WT1|1|C|G|44
5WT1|1|C|U|45
5WT1|1|C|G|46
5WT1|1|C|U|47
5WT1|1|C|C|48
5WT1|1|C|G|49
*
5WT1|1|C|C|65
5WT1|1|C|C|66

Current chains

Chain C

RNA (76-MER)

Nearby chains

Chain A

tRNA (guanine(37)-N1)-methyltransferase Trm5a