J4_4V5L_007

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V5L|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5L_007 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1388

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V5L|1|BA|C|268
4V5L|1|BA|U|269
*
4V5L|1|BA|G|370
4V5L|1|BA|A|371
4V5L|1|BA|G|372
4V5L|1|BA|U|373
4V5L|1|BA|A|374
4V5L|1|BA|C|375
*
4V5L|1|BA|G|399
4V5L|1|BA|G|400
4V5L|1|BA|A|401
4V5L|1|BA|A|402
4V5L|1|BA|U|403
4V5L|1|BA|C|404
4V5L|1|BA|U|405
4V5L|1|BA|G|406
*
4V5L|1|BA|U|421
4V5L|1|BA|A|422
4V5L|1|BA|A|423
4V5L|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28