J4_4V5M_013

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V5M|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5M_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0979

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V5M|1|BA|U|1833
4V5M|1|BA|U|1834
4V5M|1|BA|G|1835
*
4V5M|1|BA|C|1905
4V5M|1|BA|G|1906
*
4V5M|1|BA|C|1924
4V5M|1|BA|C|1925
4V5M|1|BA|U|1926
4V5M|1|BA|A|1927
4V5M|1|BA|A|1928
4V5M|1|BA|G|1929
4V5M|1|BA|G|1930
4V5M|1|BA|U|1931
4V5M|1|BA|A|1932
4V5M|1|BA|G|1933
*
4V5M|1|BA|C|1967
4V5M|1|BA|G|1968
4V5M|1|BA|A|1969
4V5M|1|BA|A|1970
4V5M|1|BA|A|1971
4V5M|1|BA|A|1972

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S RIBOSOMAL PROTEIN L2