J4_4V5O_005

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UACAU*AUGCUUAAAAU*ACG*CGGA

Length

23 nucleotides

Bulged bases

4V5O|1|BA|C|134, 4V5O|1|BA|A|135, 4V5O|1|BA|U|172, 4V5O|1|BA|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5O|1|BA|U|132
4V5O|1|BA|A|133
4V5O|1|BA|C|134
4V5O|1|BA|A|135
4V5O|1|BA|U|136
*
4V5O|1|BA|A|167
4V5O|1|BA|U|168
4V5O|1|BA|G|169
4V5O|1|BA|C|170
4V5O|1|BA|U|171
4V5O|1|BA|U|172
4V5O|1|BA|A|173
4V5O|1|BA|A|174
4V5O|1|BA|A|175
4V5O|1|BA|A|176
4V5O|1|BA|U|177
*
4V5O|1|BA|A|197
4V5O|1|BA|C|198
4V5O|1|BA|G|199
*
4V5O|1|BA|C|260
4V5O|1|BA|G|261
4V5O|1|BA|G|262
4V5O|1|BA|A|263

Current chains

Chain BA

18S RRNA

Nearby chains

Chain BW

40S RIBOSOMAL PROTEIN S4

Chain BY

RPS6E