J4_4V5Q_007

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V5Q|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5Q_007 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1814

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5Q|1|BA|C|268
4V5Q|1|BA|U|269
*
4V5Q|1|BA|G|370
4V5Q|1|BA|A|371
4V5Q|1|BA|G|372
4V5Q|1|BA|U|373
4V5Q|1|BA|A|374
4V5Q|1|BA|C|375
*
4V5Q|1|BA|G|399
4V5Q|1|BA|G|400
4V5Q|1|BA|A|401
4V5Q|1|BA|A|402
4V5Q|1|BA|U|403
4V5Q|1|BA|C|404
4V5Q|1|BA|U|405
4V5Q|1|BA|G|406
*
4V5Q|1|BA|U|421
4V5Q|1|BA|A|422
4V5Q|1|BA|A|423
4V5Q|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28