J4_4V5S_007

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5S_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.098

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V5S|1|BA|C|297
4V5S|1|BA|G|298
4V5S|1|BA|A|299
4V5S|1|BA|A|300
4V5S|1|BA|G|301
*
4V5S|1|BA|C|316
4V5S|1|BA|G|317
4V5S|1|BA|C|318
4V5S|1|BA|C|319
*
4V5S|1|BA|G|323
4V5S|1|BA|A|324
4V5S|1|BA|G|325
*
4V5S|1|BA|C|337
4V5S|1|BA|G|338
4V5S|1|BA|U|339
4V5S|1|BA|A|340
4V5S|1|BA|G|341

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BY

50S RIBOSOMAL PROTEIN L24