J4_4V5S_022

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V5S|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V5S_022 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1752

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V5S|1|DA|C|268
4V5S|1|DA|U|269
*
4V5S|1|DA|G|370
4V5S|1|DA|A|371
4V5S|1|DA|G|372
4V5S|1|DA|U|373
4V5S|1|DA|A|374
4V5S|1|DA|C|375
*
4V5S|1|DA|G|399
4V5S|1|DA|G|400
4V5S|1|DA|A|401
4V5S|1|DA|A|402
4V5S|1|DA|U|403
4V5S|1|DA|C|404
4V5S|1|DA|U|405
4V5S|1|DA|G|406
*
4V5S|1|DA|U|421
4V5S|1|DA|A|422
4V5S|1|DA|A|423
4V5S|1|DA|G|424

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28