J4_4V61_003
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 4V61|1|AA|A|520, 4V61|1|AA|C|524, 4V61|1|AA|A|763, 4V61|1|AA|C|765, 4V61|1|AA|A|767
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V61|1|AA|C|517
4V61|1|AA|G|518
4V61|1|AA|U|519
4V61|1|AA|A|520
4V61|1|AA|A|521
4V61|1|AA|A|522
4V61|1|AA|G|523
4V61|1|AA|C|524
4V61|1|AA|G|525
*
4V61|1|AA|C|712
4V61|1|AA|G|713
4V61|1|AA|A|714
4V61|1|AA|A|715
4V61|1|AA|A|716
4V61|1|AA|G|717
*
4V61|1|AA|C|758
4V61|1|AA|C|759
4V61|1|AA|G|760
4V61|1|AA|U|761
4V61|1|AA|A|762
4V61|1|AA|A|763
4V61|1|AA|A|764
4V61|1|AA|C|765
4V61|1|AA|G|766
4V61|1|AA|A|767
4V61|1|AA|U|768
4V61|1|AA|G|769
*
4V61|1|AA|C|828
4V61|1|AA|C|829
4V61|1|AA|G|830
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AE
- Ribosomal Protein S5
- Chain AH
- Ribosomal Protein S8
- Chain AL
- Ribosomal Protein S12
- Chain AO
- Ribosomal Protein S15
- Chain AQ
- Ribosomal Protein S17
- Chain AU
- Ribosomal Protein S21
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- Ribosomal Protein L2
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