J4_4V61_004
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- GUGGAUACCUAG*CGAUAGCGAAGUAGUAC*GGAAGGGUGAAAAGAAC*GAGUGAAAUAGAACAUGAAAC
- Length
- 67 nucleotides
- Bulged bases
- 4V61|1|BA|A|33, 4V61|1|BA|U|460, 4V61|1|BA|U|468, 4V61|1|BA|U|515, 4V61|1|BA|A|519, 4V61|1|BA|C|520
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V61|1|BA|G|23
4V61|1|BA|U|24
4V61|1|BA|G|25
4V61|1|BA|G|26
4V61|1|BA|A|27
4V61|1|BA|U|28
4V61|1|BA|A|29
4V61|1|BA|C|30
4V61|1|BA|C|31
4V61|1|BA|U|32
4V61|1|BA|A|33
4V61|1|BA|G|34
*
4V61|1|BA|C|457
4V61|1|BA|G|458
4V61|1|BA|A|459
4V61|1|BA|U|460
4V61|1|BA|A|461
4V61|1|BA|G|462
4V61|1|BA|C|463
4V61|1|BA|G|464
4V61|1|BA|A|465
4V61|1|BA|A|466
4V61|1|BA|G|467
4V61|1|BA|U|468
4V61|1|BA|A|469
4V61|1|BA|G|470
4V61|1|BA|U|471
4V61|1|BA|A|472
4V61|1|BA|C|473
*
4V61|1|BA|G|480
4V61|1|BA|G|481
4V61|1|BA|A|482
4V61|1|BA|A|483
4V61|1|BA|G|484
4V61|1|BA|G|485
4V61|1|BA|G|486
4V61|1|BA|U|487
4V61|1|BA|G|488
4V61|1|BA|A|489
4V61|1|BA|A|490
4V61|1|BA|A|491
4V61|1|BA|A|492
4V61|1|BA|G|493
4V61|1|BA|A|494
4V61|1|BA|A|495
4V61|1|BA|C|496
*
4V61|1|BA|G|507
4V61|1|BA|A|508
4V61|1|BA|G|509
4V61|1|BA|U|510
4V61|1|BA|G|511
4V61|1|BA|A|512
4V61|1|BA|A|513
4V61|1|BA|A|514
4V61|1|BA|U|515
4V61|1|BA|A|516
4V61|1|BA|G|517
4V61|1|BA|A|518
4V61|1|BA|A|519
4V61|1|BA|C|520
4V61|1|BA|A|521
4V61|1|BA|U|522
4V61|1|BA|G|523
4V61|1|BA|A|524
4V61|1|BA|A|525
4V61|1|BA|A|526
4V61|1|BA|C|527
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B2
- Ribosomal Protein L32
- Chain B4
- Ribosomal Protein L34
- Chain BG
- Ribosomal Protein L4
- Chain BS
- Ribosomal Protein L20
- Chain BU
- Ribosomal Protein L22
- Chain BW
- Ribosomal Protein L24
Coloring options: