J4_4V61_005

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUUG*CGUAG*CGAG*CAAUUG

Length

19 nucleotides

Bulged bases

4V61|1|BA|U|613, 4V61|1|BA|U|665, 4V61|1|BA|U|666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|611
4V61|1|BA|U|612
4V61|1|BA|U|613
4V61|1|BA|G|614
*
4V61|1|BA|C|636
4V61|1|BA|G|637
4V61|1|BA|U|638
4V61|1|BA|A|639
4V61|1|BA|G|640
*
4V61|1|BA|C|647
4V61|1|BA|G|648
4V61|1|BA|A|649
4V61|1|BA|G|650
*
4V61|1|BA|C|662
4V61|1|BA|A|663
4V61|1|BA|A|664
4V61|1|BA|U|665
4V61|1|BA|U|666
4V61|1|BA|G|667

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

Ribosomal Protein L35

Chain BG

Ribosomal Protein L4

Chain BN

Ribosomal Protein L15