J4_4V61_007

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCUAAGGGUUCC*GGGUGAGUC*GUACCCGAAAC*GUAGG

Length

37 nucleotides

Bulged bases

4V61|1|BA|G|1332, 4V61|1|BA|U|1361, 4V61|1|BA|G|1362, 4V61|1|BA|G|1643, 4V61|1|BA|A|1645

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|1325
4V61|1|BA|C|1326
4V61|1|BA|U|1327
4V61|1|BA|A|1328
4V61|1|BA|A|1329
4V61|1|BA|G|1330
4V61|1|BA|G|1331
4V61|1|BA|G|1332
4V61|1|BA|U|1333
4V61|1|BA|U|1334
4V61|1|BA|C|1335
4V61|1|BA|C|1336
*
4V61|1|BA|G|1358
4V61|1|BA|G|1359
4V61|1|BA|G|1360
4V61|1|BA|U|1361
4V61|1|BA|G|1362
4V61|1|BA|A|1363
4V61|1|BA|G|1364
4V61|1|BA|U|1365
4V61|1|BA|C|1366
*
4V61|1|BA|G|1637
4V61|1|BA|U|1638
4V61|1|BA|A|1639
4V61|1|BA|C|1640
4V61|1|BA|C|1641
4V61|1|BA|C|1642
4V61|1|BA|G|1643
4V61|1|BA|A|1644
4V61|1|BA|A|1645
4V61|1|BA|A|1646
4V61|1|BA|C|1647
*
4V61|1|BA|G|1656
4V61|1|BA|U|1657
4V61|1|BA|A|1658
4V61|1|BA|G|1659
4V61|1|BA|G|1660

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

Ribosomal Protein L34

Chain BV

Ribosomal Protein L23