J4_4V61_008

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGGCC*GGACAAC*GUACUA*UACC

Length

22 nucleotides

Bulged bases

4V61|1|BA|A|1403

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|G|1368
4V61|1|BA|G|1369
4V61|1|BA|G|1370
4V61|1|BA|C|1371
4V61|1|BA|C|1372
*
4V61|1|BA|G|1401
4V61|1|BA|G|1402
4V61|1|BA|A|1403
4V61|1|BA|C|1404
4V61|1|BA|A|1405
4V61|1|BA|A|1406
4V61|1|BA|C|1407
*
4V61|1|BA|G|1422
4V61|1|BA|U|1423
4V61|1|BA|A|1424
4V61|1|BA|C|1425
4V61|1|BA|U|1426
4V61|1|BA|A|1427
*
4V61|1|BA|U|1632
4V61|1|BA|A|1633
4V61|1|BA|C|1634
4V61|1|BA|C|1635

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

Ribosomal Protein L34

Chain BV

Ribosomal Protein L23