J4_4V61_011

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGCCUGC*GCG*CCUAAGGUAG*CGAAAGGCG

Length

29 nucleotides

Bulged bases

4V61|1|BA|A|1985

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|1840
4V61|1|BA|G|1841
4V61|1|BA|C|1842
4V61|1|BA|C|1843
4V61|1|BA|U|1844
4V61|1|BA|G|1845
4V61|1|BA|C|1846
*
4V61|1|BA|G|1918
4V61|1|BA|C|1919
4V61|1|BA|G|1920
*
4V61|1|BA|C|1938
4V61|1|BA|C|1939
4V61|1|BA|U|1940
4V61|1|BA|A|1941
4V61|1|BA|A|1942
4V61|1|BA|G|1943
4V61|1|BA|G|1944
4V61|1|BA|U|1945
4V61|1|BA|A|1946
4V61|1|BA|G|1947
*
4V61|1|BA|C|1981
4V61|1|BA|G|1982
4V61|1|BA|A|1983
4V61|1|BA|A|1984
4V61|1|BA|A|1985
4V61|1|BA|G|1986
4V61|1|BA|G|1987
4V61|1|BA|C|1988
4V61|1|BA|G|1989

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

Ribosomal Protein L2