J4_4V61_013

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGCAAACA*UGC*GCGC*GG

Length

17 nucleotides

Bulged bases

4V61|1|BA|G|1292, 4V61|1|BA|C|1293, 4V61|1|BA|A|1294, 4V61|1|BA|G|1683

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|1291
4V61|1|BA|G|1292
4V61|1|BA|C|1293
4V61|1|BA|A|1294
4V61|1|BA|A|1295
4V61|1|BA|A|1296
4V61|1|BA|C|1297
4V61|1|BA|A|1298
*
4V61|1|BA|U|1314
4V61|1|BA|G|1315
4V61|1|BA|C|1316
*
4V61|1|BA|G|1681
4V61|1|BA|C|1682
4V61|1|BA|G|1683
4V61|1|BA|C|1684
*
4V61|1|BA|G|2023
4V61|1|BA|G|2024

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

Ribosomal Protein L32

Chain BP

Ribosomal Protein L17

Chain BU

Ribosomal Protein L22