J4_4V63_006

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V63|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V63_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1682

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V63|1|BA|C|268
4V63|1|BA|U|269
*
4V63|1|BA|G|370
4V63|1|BA|A|371
4V63|1|BA|G|372
4V63|1|BA|U|373
4V63|1|BA|A|374
4V63|1|BA|C|375
*
4V63|1|BA|G|399
4V63|1|BA|G|400
4V63|1|BA|A|401
4V63|1|BA|A|402
4V63|1|BA|U|403
4V63|1|BA|C|404
4V63|1|BA|U|405
4V63|1|BA|G|406
*
4V63|1|BA|U|421
4V63|1|BA|A|422
4V63|1|BA|A|423
4V63|1|BA|G|424

Current chains

Chain BA

23S RRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9