J4_4V64_009

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V64|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1456

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V64|1|BB|U|1313
4V64|1|BB|C|1314
*
4V64|1|BB|G|1338
4V64|1|BB|G|1339
4V64|1|BB|U|1340
4V64|1|BB|G|1341
4V64|1|BB|A|1342
4V64|1|BB|G|1343
*
4V64|1|BB|C|1404
4V64|1|BB|U|1405
*
4V64|1|BB|A|1597
4V64|1|BB|A|1598
4V64|1|BB|U|1599
4V64|1|BB|C|1600
4V64|1|BB|G|1601
4V64|1|BB|U|1602
4V64|1|BB|A|1603

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L23