J4_4V64_012

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V64|1|BB|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1185

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V64|1|BB|C|1833
4V64|1|BB|U|1834
4V64|1|BB|G|1835
*
4V64|1|BB|C|1905
4V64|1|BB|G|1906
*
4V64|1|BB|C|1924
4V64|1|BB|C|1925
4V64|1|BB|U|1926
4V64|1|BB|A|1927
4V64|1|BB|A|1928
4V64|1|BB|G|1929
4V64|1|BB|G|1930
4V64|1|BB|U|1931
4V64|1|BB|A|1932
4V64|1|BB|G|1933
*
4V64|1|BB|C|1967
4V64|1|BB|G|1968
4V64|1|BB|A|1969
4V64|1|BB|A|1970
4V64|1|BB|U|1971
4V64|1|BB|G|1972

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2