J4_4V64_015

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V64|1|CA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_015 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.2216

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V64|1|CA|G|115
4V64|1|CA|A|116
4V64|1|CA|G|117
4V64|1|CA|U|118
4V64|1|CA|A|119
4V64|1|CA|A|120
4V64|1|CA|U|121
4V64|1|CA|G|122
*
4V64|1|CA|U|239
4V64|1|CA|G|240
*
4V64|1|CA|C|286
4V64|1|CA|U|287
4V64|1|CA|A|288
4V64|1|CA|G|289
*
4V64|1|CA|C|311
4V64|1|CA|C|312

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17