J4_4V64_016

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V64|1|CA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_016 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1821

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V64|1|CA|G|142
4V64|1|CA|A|143
4V64|1|CA|G|144
*
4V64|1|CA|C|178
4V64|1|CA|A|179
4V64|1|CA|U|180
4V64|1|CA|A|181
4V64|1|CA|A|182
4V64|1|CA|C|183
4V64|1|CA|G|184
*
4V64|1|CA|C|193
4V64|1|CA|C|194
4V64|1|CA|A|195
4V64|1|CA|A|196
4V64|1|CA|A|197
4V64|1|CA|G|198
*
4V64|1|CA|U|219
4V64|1|CA|G|220
4V64|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20