J4_4V64_018

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V64|1|DB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V64_018 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1614

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V64|1|DB|C|268
4V64|1|DB|C|269
*
4V64|1|DB|G|370
4V64|1|DB|A|371
4V64|1|DB|G|372
4V64|1|DB|U|373
4V64|1|DB|A|374
4V64|1|DB|G|375
*
4V64|1|DB|U|399
4V64|1|DB|G|400
4V64|1|DB|A|401
4V64|1|DB|A|402
4V64|1|DB|U|403
4V64|1|DB|A|404
4V64|1|DB|U|405
4V64|1|DB|G|406
*
4V64|1|DB|C|421
4V64|1|DB|A|422
4V64|1|DB|A|423
4V64|1|DB|G|424

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28