J4_4V65_001

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V65|1|A1|C|183, 4V65|1|A1|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|A1|G|142
4V65|1|A1|A|143
4V65|1|A1|G|144
*
4V65|1|A1|C|178
4V65|1|A1|A|179
4V65|1|A1|U|180
4V65|1|A1|A|181
4V65|1|A1|A|182
4V65|1|A1|C|183
4V65|1|A1|G|184
*
4V65|1|A1|C|193
4V65|1|A1|C|194
4V65|1|A1|A|195
4V65|1|A1|A|196
4V65|1|A1|A|197
4V65|1|A1|G|198
*
4V65|1|A1|U|219
4V65|1|A1|G|220
4V65|1|A1|C|221

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S20